V. D. Onufriev: search on Z-Library

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1

The Amber biomolecular simulation programs

David A. Case, Thomas E. Cheatham III, Tom Darden, Holger Gohlke, Ray Luo, Kenneth M. Merz Jr., Alexey Onufriev, Carlos Simmerling, Bing Wang, Robert J. Woods

Journal:

Journal of Computational Chemistry

Year:

2005

Language:

english

File:

PDF, 587 KB

english, 2005

2

Measurements of the specific heat and resistance of liquid carbon close to isochoric condition

Savvatimskiy, Alexander I., Onufriev, Sergey V.

Journal:

Year:

2018

Language:

english

File:

PDF, 947 KB

english, 2018

3

Changes in cyclin and cyclin-dependent protein kinase expression in the long-tailed ground squirrel (Spermophilus undulatus) brain during hibernation and awakening

M. V. Onufriev,T. P. Semenova,M. A. Sergun’kina,E. P. Volkova…

Journal:

Year:

2016

Language:

english

File:

PDF, 310 KB

english, 2016

4

The characteristics of the expression of the Cdk1 and Cyclin B1 Proteins in the brain of the Yakut ground squirrel (Spermophilus undulatus) at different stages of the hibernation cycle

Onufriev, M. V., Semenova, T. P., Volkova, E. P., Sergun’kina, M. A., Yakovlev, A. A., Zakharova, N. M., Gulyaeva, N. V.

Journal:

Neurochemical Journal

Year:

2016

Language:

english

File:

PDF, 508 KB

english, 2016

5

Capabilities of pulse current heating to study the properties of graphite at elevated pressures and at high temperatures (up to 5000 K)

Savvatimskiy, Alexander, Onufriev, Sergey, Kondratyev, Arseniy

Journal:

Year:

2016

Language:

english

File:

PDF, 464 KB

english, 2016

6

The application of the fast pulse heating method for investigation of carbon-rich side of Zr–C phase diagram under high temperatures

Kondratyev, Arseniy, Muboyajan, Sergey, Onufriev, Sergey, Savvatimskiy, Alexander

Journal:

Journal of Alloys and Compounds

Year:

2015

Language:

english

File:

PDF, 1.78 MB

english, 2015

7

Seasonal changes in actin and Cdk5 expression in different brain regions of the Yakut ground squirrel (Spermophilus undulatus)

Onufriev, M. V., Semenova, T. P., Volkova, E. P., Sergun’kina, M. A., Yakovlev, A. A., Zakharova, N. M., Gulyaeva, N. V.

Journal:

Neurochemical Journal

Year:

2016

Language:

english

File:

PDF, 454 KB

english, 2016

8

Generalized Born Implicit Solvent Models for Biomolecules

Onufriev, Alexey V., Case, David A.

Journal:

Annual Review of Biophysics

Year:

2019

File:

PDF, 2.00 MB

2019

9

Specific Heat of Liquid Iron from the Melting Point to the Boiling Point

Savvatimskiy, A. I., Onufriev, S. V.

Journal:

High Temperature

Year:

2018

Language:

english

File:

PDF, 393 KB

english, 2018

10

An n log n Generalized Born Approximation

Anandakrishnan, Ramu, Daga, Mayank, Onufriev, Alexey V.

Journal:

Journal of Chemical Theory and Computation

Year:

2011

Language:

english

File:

PDF, 4.84 MB

english, 2011

11

Water models for biomolecular simulations

Onufriev, Alexey V., Izadi, Saeed

Journal:

Wiley Interdisciplinary Reviews: Computational Molecular Science

Year:

2017

Language:

english

File:

PDF, 1.21 MB

english, 2017

12

High-temperature dynamic behavior in bulk liquid water: A molecular dynamics simulation study using the OPC and TIP4P-Ew potentials

Gabrieli, Andrea, Sant, Marco, Izadi, Saeed, Shabane, Parviz Seifpanahi, Onufriev, Alexey V., Suffritti, Giuseppe B.

Journal:

Frontiers of Physics

Year:

2018

Language:

english

File:

PDF, 818 KB

english, 2018

13

Panthenol as neuroprotectant: Study in a rat model of middle cerebral artery occlusion

M. V. Onufriev, M. Yu. Stepanichev, N. V. Lazareva, I. N. Katkovskaya, A. O. Tishkina, A. G. Moiseenok, N. V. Gulyaeva

Journal:

Neurochemical Journal

Year:

2010

Language:

english

File:

PDF, 242 KB

english, 2010

14

Measurement of ZrC properties up to 5000 K by fast electrical pulse heating method

Savvatimskiy, Alexander I., Onufriev, Sergey V., Muboyadzhyan, Sergey A.

Journal:

Journal of Materials Research

Year:

2017

Language:

english

File:

PDF, 424 KB

english, 2017

15

Temperature of products of a hydrogen-air mixture explosion in conical cavity

Journal:

High Temperature

Year:

2012

Language:

english

File:

PDF, 291 KB

english, 2012

16

Region-specific changes in activities of cell death-related proteases and nitric oxide metabolism in rat brain in a chronic unpredictable stress model

Tishkina, Anna, Rukhlenko, Alexey, Stepanichev, Mikhail, Levshina, Irina, Pasikova, Natalia, Onufriev, Mikhail, Moiseeva, Yulia, Piskunov, Alexey, Gulyaeva, Natalia

Journal:

Metabolic Brain Disease

Year:

2012

Language:

english

File:

PDF, 447 KB

english, 2012

17

An Experimental Investigation of the Elastic Dynamic Characteristics of a Model of an Ampoule for the Space Transportation of Radioactive Wastes at High Temperatures

Onufriev, A. V., Dmitriev, S. N., Aliev, I. N., Onufriev, V. V.

Journal:

Measurement Techniques

Year:

2015

Language:

english

File:

PDF, 232 KB

english, 2015

18

Protonation and pK changes in protein–ligand binding

Onufriev, Alexey V., Alexov, Emil

Journal:

Quarterly Reviews of Biophysics

Year:

2013

Language:

english

File:

PDF, 539 KB

english, 2013

19

Hair cortisol as a marker of hypothalamic-pituitary-adrenal Axis activity in female patients with major depressive disorder

Pochigaeva, Ksenia, Druzhkova, Tatiana, Yakovlev, Alexander, Onufriev, Mikhail, Grishkina, Maria, Chepelev, Aleksey, Guekht, Alla, Gulyaeva, Natalia

Journal:

Metabolic Brain Disease

Year:

2017

Language:

english

File:

PDF, 426 KB

english, 2017

20

Calculation of radiative energy transfer in spectral lines

A. T. Onufriev, V. G. Sevast'yanenko

Journal:

Journal of Applied Mechanics and Technical Physics

Year:

1967

Language:

english

File:

PDF, 177 KB

english, 1967

21

[Annual Reports in Computational Chemistry] Volume 4 || Implicit Solvent Models in Molecular Dynamics Simulations: A Brief Overview

Onufriev, Alexey

Year:

2008

Language:

english

File:

PDF, 319 KB

english, 2008

22

Adaptive landscape flattening allows the design of both enzyme: Substrate binding and catalytic power

Opuu, Vaitea, Nigro, Giuliano, Gaillard, Thomas, Schmitt, Emmanuelle, Mechulam, Yves, Simonson, Thomas, Onufriev, Alexey

Journal:

PLoS Computational Biology

Year:

2020

Language:

english

File:

PDF, 5.17 MB

english, 2020

23

Thermophysical properties of multicomponent nickel-chromium alloy VSDP-3 upon melting and in the liquid phase

Savvatimskiy, A. I., Onufriev, S. V., Muboyadzhyan, S. A., Seredkin, N. N., Konyukhov, S. A.

Journal:

High Temperature

Year:

2017

Language:

english

File:

PDF, 432 KB

english, 2017

24

Laser-Stimulated Phase Transformations in Thin Layers of SiOx and CNx –Ni

Fedorenko, L. L., Prudnikov, A. M., Evtukh, A. A., Medvid’, A. P., Steblova, O. V., Onufriev, P. A., Korchovyi, A. A., Uvarov, V. S.

Journal:

Materials Science (Springer)

Year:

2018

Language:

english

File:

PDF, 1.44 MB

english, 2018

25

Tumor necrosis factor-alpha aggravates hippocampal damage in rat induced by amyloid beta-peptide (25–35)

M. Stepanichev, A. Yakovlev, M. Onufriev, N. Lazareva, I. Zarubenko, N. Gulyaeva

Journal:

Journal of Neurochemistry

Year:

2003

Language:

english

File:

PDF, 65 KB

english, 2003

26

The thermophysical properties of hafnium in the temperature range from 293 to 2000 K

S. V. Onufriev, V. A. Petukhov, V. R. Pesochin, V. D. Tarasov

Journal:

High Temperature

Year:

2008

Language:

english

File:

PDF, 190 KB

english, 2008

27

Regulation of cathepsin B and caspase-3 in long-term plasticity

I. V. Kudryashova, M. V. Onufriev, I. E. Kudryashov, N. V. Gulyaeva

Journal:

Neurochemical Journal

Year:

2009

Language:

english

File:

PDF, 188 KB

english, 2009

28

Oxidative stress in the brain following intraventricular administration of ethylcholine aziridinium (AF64A)

N.V. Gulyaeva, N.A. Lazareva, M.L. Libe, O.S. Mitrokhina, M.V. Onufriev, M.Yu. Stepanichev, I.A. Chernysevskaya, T.J. Walsh

Journal:

Year:

1996

Language:

english

File:

PDF, 829 KB

english, 1996

29

Modulation of nitric oxide synthase activity in brain regions: Physiological and pathophysiological implications

M.Yu. Stepanichev, M.V. Onufriev, A.V. Volkov, Yu.N. Zarzhetsky, N.V. Gulyaeva

Journal:

Pharmacological Research

Year:

1995

Language:

english

File:

PDF, 145 KB

english, 1995

30

Dynamics of the weed component and productivity of a grain corn agrophytocenose on ordinary chernozem under various primary tillage systems

A. V. Mal’tsev, V. P. Kalinichenko, V. V. Chernenko, O. A. Onufriev, T. V. Akulova

Journal:

Russian Agricultural Sciences

Year:

2012

Language:

english

File:

PDF, 83 KB

english, 2012

31

NO synthase, and free radical generation in brain regions of old rats

Gulyaeva, Natalia V., Onufriev, Mikhail V., Stepanichev, Mikhail Yu.

Journal:

Year:

1994

File:

PDF, 288 KB

1994

32

Lentiviral Modulation of Wnt/β-Catenin Signaling Affects In Vivo LTP

Ivanova, Olga Ya, Dobryakova, Yulia V., Salozhin, Sergey V., Aniol, Viktor A., Onufriev, Mikhail V., Gulyaeva, Natalia V., Markevich, Vladimir A.

Journal:

Cellular and Molecular Neurobiology

Year:

2016

Language:

english

File:

PDF, 1.60 MB

english, 2016

33

Accuracy comparison of several common implicit solvent models and their implementations in the context of protein-ligand binding

Katkova, E.V., Onufriev, A.V., Aguilar, B., Sulimov, V.B.

Journal:

Journal of Molecular Graphics and Modelling

Year:

2017

Language:

english

File:

PDF, 714 KB

english, 2017

34

A general probabilistic model of the PCR process

Nilanjan Saha, Layne T. Watson, Karen Kafadar, Alexey Onufriev, Naren Ramakrishnan, Cecilia Vasquez-Robinet, Jonathan Watkinson

Journal:

Applied Mathematics and Computation

Year:

2006

Language:

english

File:

PDF, 227 KB

english, 2006

35

Experimental study of the behavior of the energy spectrum in a turbulent flow in a tube rotating relative to its longitudinal axis

P. G. Zaets, A. T. Onufriev, N. A. Safarov, R. A. Safarov

Journal:

Journal of Applied Mechanics and Technical Physics

Year:

1992

Language:

english

File:

PDF, 464 KB

english, 1992

36

Modeling the turbulent transport of an impulse in the wake of a cylinder with the use of equations for third moments

A. F. Kurbatskii, A. T. Onufriev

Journal:

Journal of Applied Mechanics and Technical Physics

Year:

1979

Language:

english

File:

PDF, 714 KB

english, 1979

37

Swelling of steels and alloys irradiated in the BOR-60 reactor to a fluence of 1.1·1023neutrons/cm2

N. P. Agapova, V. S. Ageev, I. N. Afrikanov, N. I. Budylkin, V. A. Krasnoselov, E. G. Mironova, V. D. Onufriev, Z. E. Ostrovskii, V. I. Prokhorov, Yu. N. Sokurskii

Journal:

Year:

1978

Language:

english

File:

PDF, 1.15 MB

english, 1978

38

Experimental study of spectra corresponding to friction stress and the third statistical moments in fully developed turbulent pipe flow

P. G. Zaets, A. T. Onufriev, N. A. Safarov, R. A. Safarov

Journal:

Journal of Applied Mechanics and Technical Physics

Year:

1994

Language:

english

File:

PDF, 318 KB

english, 1994

39

A Computational Study of Nucleosomal DNA Flexibility

Ruscio, Jory Z., Onufriev, Alexey

Journal:

Biophysical Journal

Year:

2006

Language:

english

File:

PDF, 563 KB

english, 2006

40

Modification of the Generalized Born Model Suitable for Macromolecules

Onufriev, Alexey, Bashford, Donald, Case, David A.

Journal:

Journal of Physical Chemistry B

Year:

2000

Language:

english

File:

PDF, 185 KB

english, 2000

41

From Small to Large to Very Large: Modeling of Biomolecular Structures in Implicit Solvent

Onufriev, Alexey V.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 36 KB

english, 2015

42

Pathogenic peptide deviations support a model of adaptive evolution of chordate cardiac performance by troponin mutations

Palpant, N. J., Houang, E. M., Delport, W., Hastings, K. E. M., Onufriev, A. V., Sham, Y. Y., Metzger, J. M.

Journal:

Physiological Genomics

Year:

2010

Language:

english

File:

PDF, 4.49 MB

english, 2010

43

Increased S-nitrosothiols are associated with spinal cord injury in multiple sclerosis

Fominykh, Vera, Onufriev, Mikhail V., Vorobyeva, Anna, Brylev, Lev, Yakovlev, Alexander A., Zakharova, Maria N., Gulyaeva, Natalia V.

Journal:

Journal of Clinical Neuroscience

Year:

2016

Language:

english

File:

PDF, 489 KB

english, 2016

44

Fuller use of the resources of the construction ceramics industry

Journal:

Glass and Ceramics

Year:

1970

Language:

english

File:

PDF, 173 KB

english, 1970

45

Three-dimensional problem of exponentially stratified flow over bottom roughness in the case of finite depth

K. A. Bezhanov, P. G. Zaets, A. T. Onufriev, A. M. Ter-Krikorov

Journal:

Year:

1990

Language:

english

File:

PDF, 595 KB

english, 1990

46

Release of hydrogen from 0Kh16N15M3B steel on heating

A. G. Zaluzhnyi, D. M. Skorov, A. G. Zholnin, V. D. Onufriev, I. N. Afrikanov, V. S. Tsyplenkov, V. G. Vladimirov, V. P. Kopytin

Journal:

Year:

1979

Language:

english

File:

PDF, 154 KB

english, 1979

47

Assessment of caspase 3 activity in rabbit myocardial tissue during experimental hemodynamic overload of the left ventricle of the heart

M. L. Blagonravov, M. V. Onufriev, E. A. Demurov, N. V. Gulyaeva, V. A. Frolov

Journal:

Biochemistry (Moscow) Supplemental Series B: Biomedical Chemistry

Year:

2011

Language:

english

File:

PDF, 117 KB

english, 2011

48

Amyloid-β (25–35) increases activity of neuronal NO-synthase in rat brain

Mikhail Yu. Stepanichev, Mikhail V. Onufriev, Alexander A. Yakovlev, Andrey I. Khrenov, Danil I. Peregud, Olga N. Vorontsova, Natalia A. Lazareva, Natalia V. Gulyaeva

Journal:

Neurochemistry International

Year:

2008

Language:

english

File:

PDF, 1.04 MB

english, 2008

49

Method and apparatus for studying high-temperature properties of conductive materials in the interests of nuclear power engineering

A. I. Savvatimskiy,S. V. Onufriev

Journal:

Physics of Atomic Nuclei

Year:

2016

Language:

english

File:

PDF, 1.16 MB

english, 2016

50

The Role of Chromosome–Nuclear Envelope Attachments in 3D Genome Organization

Sharakhov, I. V., Bondarenko, S. M., Artemov, G. N., Onufriev, A. V.

Journal:

Biochemistry (Moscow)

Year:

2018

Language:

english

File:

PDF, 401 KB

english, 2018

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